...

src/calibre/gui2/actions.py

@@ -839,10 +839,11 @@ class EditMetadataAction(object): # {{{
         d = TagListEditor(self, tag_to_match=None, data=result, compare=compare)
         d.exec_()
         if d.result() == d.Accepted:
-            to_rename = d.to_rename # dict of new text to old id
+            to_rename = d.to_rename # dict of new text to old ids
             to_delete = d.to_delete # list of ids
             for text in to_rename:
-                model.rename_collection(old_id=to_rename[text], new_name=unicode(text))
+                for old_id in to_rename[text]:
+                    model.rename_collection(old_id, new_name=unicode(text))
             for item in to_delete:
                 model.delete_collection_using_id(item)
             self.upload_collections(model.db, view=view, oncard=oncard)

src/calibre/gui2/dialogs/tag_list_editor.py

@@ -73,7 +73,10 @@ class TagListEditor(QDialog, Ui_TagListEditor):
                 return
         if item.text() != self.item_before_editing.text():
             (id,ign) = self.item_before_editing.data(Qt.UserRole).toInt()
-            self.to_rename[item.text()] = id
+            if item.text() not in self.to_rename:
+                self.to_rename[item.text()] = [id]
+            else:
+                self.to_rename[item.text()].append(id)
 
     def rename_tag(self):
         item = self.available_tags.currentItem()

src/calibre/gui2/tag_view.py

@@ -720,7 +720,8 @@ class TagBrowserMixin(object): # {{{
                 delete_func = partial(db.delete_custom_item_using_id, label=cc_label)
             if rename_func:
                 for text in to_rename:
-                    rename_func(old_id=to_rename[text], new_name=unicode(text))
+                        for old_id in to_rename[text]:
+                            rename_func(old_id, new_name=unicode(text))
                 for item in to_delete:
                     delete_func(item)
 

src/calibre/manual/faq.rst

@@ -107,17 +107,27 @@ How does |app| manage collections on my SONY reader?
 When |app| connects with the device, it retrieves all collections for the books on the device. The collections
 of which books are members are shown on the device view.
 
-When you send a book to the device, |app| will if necessary create new collections based on the metadata for
+When you send a book to the device, |app| will add the book to collections based on the metadata for that book. By
-that book, then add the book to the collections. By default, collections are created from tags and series. You
+default, collections are created from tags and series. You can control what metadata is used by going to
-can control what metadata is used by going to Preferences->Plugins->Device Interface plugins and customizing
+Preferences->Plugins->Device Interface plugins and customizing the SONY device interface plugin. If you remove all
-the SONY device interface plugin.
+values, |app| will not add the book to any collection.
 
-|app| will not delete already existing collections for a book on your device when you resend the book to the
+Collection management is largely controlled by 'Preserve device collections' found at Preferences->Add/Save->Sending
-device. To ensure that the collections are based only on current |app| metadata, first delete the books from
+to device. If checked (the default), managing collections is left to the user; |app| will not delete already
-the device, and then resend the books.
+existing collections for a book on your device when you resend the book to the device, but |app| will add the book to
+collections if necessary.  To ensure that the collections for a book are based only on current |app| metadata, first
+delete the books from the device, then resend the books.  You can edit collections directly on the device view by
+double-clicking or right-clicking in the collections column.
 
-You can edit collections on the device in the device view in |app| by double clicking or right clicking on the
+If 'Preserve device collections' is not checked, then |app| will manage collections. Collections will be built using
-collections field. This is the only way to remove a book from a collection.
+|app| metadata exclusively.  Sending a book to the device will correct the collections for that book so its
+collections exactly match the book's metadata. Collections are added and deleted as necessary.  Editing collections on
+the device pane is not permitted, because collections not in the metadata will be removed automatically.
+
+In summary, check 'Preserve device collections' if you want to manage collections yourself.  Collections for a book
+will never be removed by |app|, but can be removed by you by editing on the device view.  Uncheck 'Preserve device
+collections' if you want |app| to manage the collections, adding books to and removing books from collections as
+needed.  
 
 Can I use both |app| and the SONY software to manage my reader?
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